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SNP Miniplexes for Individual Identification of Random-Bred Domestic Cats

NCJ Number
310102
Journal
Journal of Forensic Sciences Volume: 61 Issue: 3 Dated: April 2016 Pages: 594-606
Author(s)
Ashley Brooks; Erica K. Creighton; Barbara Gandolfi; Razib Khan; Robert A. Grahn; Leslie A. Lyons
Date Published
April 2016
Length
13 pages
Annotation

This paper describes a study that explored the potential for cat fur obtained from crime scenes to link perpetrators, accomplices, witnesses, and victims, since cat hairs can persist and be transferred without the presence of the cat and they can have nucleated cells in epithelial cells on the hair shaft as well as the hair bulb; it describes the materials and methods, DNA sample selection and purification process, and results.

Abstract

Phenotypic and genotypic characteristics of the cat can be obtained from single nucleotide polymorphisms (SNPs) analyses of fur. This study developed miniplexes using SNPs with high discriminating power for random-bred domestic cats, focusing on individual and phenotypic identification. Seventy-eight SNPs were investigated using a multiplex PCR followed by a fluorescently labeled single base extension (SBE) technique (SNaPshot®). The SNP miniplexes were evaluated for reliability, reproducibility, sensitivity, species specificity, detection limitations, and assignment accuracy. Six SNPplexes were developed containing 39 intergenic SNPs and 26 phenotypic SNPs, including a sex identification marker, ZFXY. The combined random match probability (cRMP) was 6.58 × 10−19 across all Western cat populations and the likelihood ratio was 1.52 × 1018. These SNPplexes can distinguish individual cats and their phenotypic traits, which could provide insight into crime reconstructions. A SNP database of 237 cats from 13 worldwide populations is now available for forensic applications. (Published Abstract Provided)